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Where are you stuck?

01

Lack of a good starting point for a challenging target

We pick the right entry point with you. Diversity screening against 400,000+ compounds, fragment-based discovery where the pocket is shallow, virtual screening to narrow the field first, or display technologies when the answer is a peptide or an antibody.

02

Works in 2D, fails in vivo

Reevaluate it in organoids, then orthotopic models. Find where the activity is lost, before chemistry commits again.

03

Unsure which modality fits

Small molecule, peptide, antibody or ADC. Same target, same hands, comparable data.

04

The model you need is hard to build

Isogenic lines, patient-derived cultures and orthotopic models require careful engineering and validation. We edit them here, then confirm the model represents the tissue before a program depends on it.

05

It works, but you can’t say why

Target engagement, pathway effects, and where in the tumor the drug actually reaches. Mechanism evidence is what turns a compound into a translational plan with defined biomarkers and a defensible dose.

Which modality fits the target?

1 target

Click a hexagon

Each one opens the science behind it.

Small molecules

Enzymatic, allosteric, covalent and protein–protein interaction inhibitors, carried from hit to optimized lead

Proximity inducers

Leveraging advanced proximity-induction platforms for the discovery of targeted protein degradation and stabilization therapeutics, including PROTACs, molecular glues, and emerging modalities

Peptides

Non-natural amino acids, backbone edits and conformational constraint, moving exposure from hours to weeks

ADCs & PDCs

Payload conjugation, DAR analytics, aggregation, cytotoxicity, bystander effect, in vivo stability and efficacy

Antibodies

scFv ID & maturation, binding & internalization, direct signaling blockade, immune effector recruitment, checkpoint inhibition

Cell therapies

scFv discovery & maturation, CAR construct design & engineering, CAR-T production, in vitro and in vivo functional validation

How complex does the model need to be?

Complexity buys physiological relevance but costs throughput. Each model is deployed according to the biological question and the throughput the analysis requires.

ThroughputPhysiological relevance
2D CELL LINES01 / 05
3D SPHEROIDS03 / 05
ORGANOIDS04 / 05
CO-CULTURES02 / 05
PRIMARY AND iPS-DERIVED CELLS05 / 05
And in vivo

Subcutaneous and orthotopic xenografts, syngeneic models, intracranial engraftment.

IRBM PLATFORM

Complex 3D Patient Organoids (C3PO) platform

A patient-derived tumor line and selected tumor-microenviroment (TME) lines, each carrying its own fluorescent label, are seeded together and grown as spheroids. Compounds are then tested on that co-culture and imaged channel by channel, so the effect on the tumour cells and on the microenvironment cells is quantified in the same well.

STEP 01

Seeding and spheroid formation

Mixing of different labelled cell populations at seeding, left to form spheroids by day 6.

Tumour cell line 1Tumour cell line 1 labelled and suspendedTUMOR CELL LINE
TME cell line 2TME cell line 2 labelled and suspendedTME CELL LINE 1
TME cell line 3TME cell line 3 labelled and suspendedTME CELL LINE 2
The three labelled populations mixed in one tubeMixing of different labelled cell populations
Cells settling at the bottom of a round-bottom well at seedingDay 0 · seeding

A single spheroid formed at the bottom of the wellDay 6 · spheroid
Merged-channel image of a three-population spheroid at day 6Wide field of the labelled co-culture, a magnified region of the spheroid at left

Spheroid, merged channels

Step 02

Compound testing and high content analysis

Drug treatment across a dose-response, high content multi-channel imaging, then image analysis and quantification.

Drug treatment · dose-response
High content multi-channel imaging
GFP channel of a C3PO spheroidGFP
tdTomato channel of a C3PO spheroidtdTomato
RFP channel of a C3PO spheroidRFP
Merge channel of a C3PO spheroidMerge
Image analysis and quantification
Intensity heat map of a segmented spheroidSegmentation
Orthogonal views through the spheroidOrthogonal views
Bar chart of GFP intensity rising from about 0.9 at day 0 to 3.0 times ten to the ninth at day 10GFP intensity (×10⁹) by day
Dose-response curve of tumour cell viability falling from 100 percent to under 20 percent as concentration rises to 10 micromolarCELL VIABILITY (%) VS CONCENTRATION (µM)

Four patient-derived glioma models, imaged channel by channel

Click a model to view individual channels.

C3PO1 · individual channels
Patient-derived Glioma Stem-like CellsC3PO1 spheroid, GFP channel, glioma stem-like cells, 100 micrometre scale bar
Human MicrogliaC3PO1 spheroid, tdTomato channel, human microglia, 100 micrometre scale bar
Human AstrocytesC3PO1 spheroid, RFP channel, human astrocytes, 100 micrometre scale bar
MergeC3PO1 spheroid, merged channels, 100 micrometre scale bar
C3PO4 · individual channels
Patient-derived Glioma Stem-like CellsC3PO4 spheroid, GFP channel, glioma stem-like cells, 100 micrometre scale bar
Human MicrogliaC3PO4 spheroid, tdTomato channel, human microglia, 100 micrometre scale bar
Human AstrocytesC3PO4 spheroid, RFP channel, human astrocytes, 100 micrometre scale bar
MergeC3PO4 spheroid, merged channels, 100 micrometre scale bar
C3PO6 · individual channels
Patient-derived Glioma Stem-like CellsC3PO6 spheroid, GFP channel, glioma stem-like cells, 100 micrometre scale bar
Human MicrogliaC3PO6 spheroid, tdTomato channel, human microglia, 100 micrometre scale bar
Human AstrocytesC3PO6 spheroid, RFP channel, human astrocytes, 100 micrometre scale bar
MergeC3PO6 spheroid, merged channels, 100 micrometre scale bar
C3PO7 · individual channels
Patient-derived Glioma Stem-like CellsC3PO7 spheroid, GFP channel, glioma stem-like cells, 100 micrometre scale bar
Human MicrogliaC3PO7 spheroid, tdTomato channel, human microglia, 100 micrometre scale bar
Human AstrocytesC3PO7 spheroid, RFP channel, human astrocytes, 100 micrometre scale bar
MergeC3PO7 spheroid, merged channels, 100 micrometre scale bar
Scale bar 100 µm
Case studies

From challenging targets to preclinical candidates

Two different modalities and targets, each advanced to a preclinical candidate.

Two case studies · click one to open it below

An orally dosed SHP2 inhibitor that reaches the brain, without trading away potency.

The landscape

Fifteen SHP2 inhibitors have entered clinical trials. None has reached the market, and none is in active trials for brain cancers.

From lead to brain-penetrant candidate

Structure-guided optimization of I-0436650 delivered I-1000233: a potent, orally bioavailable allosteric SHP2 inhibitor that evades efflux and crosses the blood-brain barrier.

Close-up of I-0436650 bound in the SHP2 allosteric tunnel, contacting THR-108, GLU-110, ARG-111, PHE-113 and GLN-257, with the LHS, core and RHS of the ligand marked
I-0436650 BOUND TO SHP2 — PDB 29MM
Bioluminescent flux over 21 days in an orthotopic glioblastoma model: vehicle tumors grow to about 39,000 photons per second while both I-1000233 dose arms stay near baseline

In vivo tumor regression · orthotopic glioblastoma xenograft
In vivo tumor regression of GBM models

In orthotopic glioblastoma xenograft models, oral administration of I-1000233 produced marked tumor growth inhibition, robust pERK suppression, and significantly extended survival.

I-1000233 viability IC50 across twelve patient-derived glioblastoma stem cell lines: six hyper-responder lines sit near 500 nanomolar, while resistant lines reach 20,000 to 60,000 nanomolar

IN VITRO DRUG RESPONSE · PATIENT-DERIVED GSCs
Responder ID population in glioblastoma

I-1000233 treatment of patient-derived GSCs and TCGA patient data integration revealed selective sensitivity in the GBM proneural subtype: a biomarker signature for targeted patient selection.

The campaign — step through it

A screening hit with the allosteric site confirmed by co-crystal, and an SPR assay in place to rank everything that came after it.

HIT IDENTIFIEDCO-CRYSTAL PDB 8B5YSPR ASSAY ENABLED

Scaffold hopping and a modified thiol fragment cleared the hERG liability without giving up potency.

SCAFFOLD HOPPINGTHIOL FRAGMENT MODIFIEDhERG LIABILITY CLEARED

The preclinical candidate: 4 nM enzymatic, clean safety panels, and oral exposure in every species tested.

ORAL, ONCE DAILYCO-CRYSTAL PDB 29MMPRECLINICAL CANDIDATE

A brain-permeable follow-up compound, aimed at brain tumors and metastases.

BRAIN PENETRANTFOLLOW-UP COMPOUNDTUMORS AND METASTASES

Discovered, optimized and characterized at IRBM.
See the latest publication on this program →

Discover, conjugate, de-risk: a complete CRLF2 ADC development pipeline

Why this patient group

CRLF2 overexpression defines a high-risk subset of Ph-like B-ALL. There is no approved targeted therapy for it.

The funnel

Phage display against recombinant protein and cells identified AM E3, a fully human α-CRLF2 mAb with single-digit nanomolar affinity for the target and a rapid internalization rate.

Pipeline diagram: phage display, IgG conversion, optimized antibody candidate, antibody-drug conjugate
A first-in-class CRLF2 ADC

Upon conjugation with the payload tesirine (SG3249), a clinically validated cross-linking agent, AM E3-SG3249 demonstrated a potent anti-tumor effect on several CRLF2-overexpressing cell lines and orthotopic xenograft models.

De-risking toxicity

An ADC surrogate against murine CRLF2, which has limited homology with the human counterpart, proved to be efficacious and well-tolerated in preclinical mouse models.

Kaplan-Meier survival over 105 days in an orthotopic CRLF2 xenograft model: vehicle animals are lost by day 35, standard of care and the control ADC by day 57, while the CRLF2 ADC arm holds above 80 percent survival to day 105

PROBABILITY OF SURVIVAL · ORTHOTOPIC B-ALL XENOGRAFT, 105 DAYS
 
hCRLF2
hCD19
DAPI
Merge
Vehicle

Vehicle bone marrow, crlf2 channelVehicle bone marrow, cd19 channelVehicle bone marrow, dapi channelVehicle bone marrow, merged channels channel

SoC

SoC bone marrow, crlf2 channelSoC bone marrow, cd19 channelSoC bone marrow, dapi channelSoC bone marrow, merged channels channel

Control ADCIsotype-SG3249

Control ADC bone marrow, crlf2 channelControl ADC bone marrow, cd19 channelControl ADC bone marrow, dapi channelControl ADC bone marrow, merged channels channel

CRLF2 ADCAM E3-SG3249

CRLF2 ADC bone marrow, crlf2 channelCRLF2 ADC bone marrow, cd19 channelCRLF2 ADC bone marrow, dapi channelCRLF2 ADC bone marrow, merged channels channel

BONE MARROW IMMUNOFLUORESCENCE
Cell therapy

CAR-T Platform

From scFv discovery to functional validation of CAR-T cell therapy.

01
scFv ID & maturation by phage display
Screen high-complexity libraries
02
CAR constructs design
& engineering
Define target domains
03
CAR viral particles &
production of CAR-T cells
Lentiviral vector · receptor domains
04
Functional validation of CAR-T cells in vitro
Fine-tune cell signaling dynamics ↓
05
Functional validation of CAR-T cells in vivo
Efficacy in tumor-bearing models
Time-lapse frames at 0, 5 and 15 minutes: a CAR-T cell forms a synapse with a tumour cell, ending in an apoptotic tumour cell
CAR-T cell killing · immunological synapse to cytotoxicity

Who we work with

We partner with world-renowned organizations devoted to cancer patient care, including MD Anderson Cancer Center. The NIH selected us for the NCI Experimental Therapeutics (NExT) Program’s Chemical Biology Consortium, addressing unmet needs in therapeutic oncology.

On the market
ZEJULA®
PARP1/2 inhibitor · Ovarian cancer

IRBM chemistry contributed to the approved drug.

Where should we start?

One screen. One model. One mechanism of action. Or the entire research program, with one team accountable for it.

Frequently Asked Questions

Which oncology models does IRBM run in-house?

Cell models spanning different levels of complexity: 2D stable and primary cells, 3D spheroids, patient-derived organoids including C3PO brain tumor organoids, co-cultures with immune or stromal compartments, and iPS-derived cells. In vivo work covers subcutaneous and orthotopic xenografts, syngeneic models and intracranial engraftment.

Which therapeutic modalities does IRBM support in oncology?

Small molecules including allosteric, covalent and protein–protein interaction inhibitors; proximity inducers such as PROTACs and molecular glues; therapeutic peptides; ADCs and PDCs; antibodies; and the discovery and functional validation stages of cell therapy programs. Because the campaigns run in the same building, a target can be tested across more than one modality on comparable data.

How does IRBM approach brain-penetrant drug discovery?

Design criteria are fixed before chemistry begins: a CNS MPO score of 4 or above, efflux ratio below 2 against both MDR1 and BCRP, and in vivo free brain-to-plasma partition above 0.3. Compounds are assessed against an iPSC-derived blood–brain barrier model built in-house, then confirmed in vivo. Applied to I-0436650, this converted a peripherally restricted compound into I-1000233, with a rodent Kp,uu of 1.0 and potency held at 17 nM on p-ERK.

Where is the work carried out, and under what accreditations?

All oncology work is carried out at IRBM’s single research site in Rome, Italy. In vivo studies run under AAALAC International accreditation, with study protocols reviewed by the internal Animal Welfare Body / OPBA and authorized under Italian and EU legislation. The site holds ISO 9001 certification, and IRBM is a member of the NCI Experimental Therapeutics (NExT) Program’s Chemical Biology Consortium.

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